+ Reply to Thread
Results 1 to 8 of 8

how to calculate the probability to be homozygous?

Hybrid View

celdemer how to calculate the... 06-28-2017, 11:12 PM
FDibbins Re: how to calculate the... 06-28-2017, 11:27 PM
leelnich Re: how to calculate the... 06-28-2017, 11:35 PM
celdemer Re: how to calculate the... 06-29-2017, 12:28 AM
JeteMc Re: how to calculate the... 06-29-2017, 11:01 AM
shg Re: how to calculate the... 06-29-2017, 12:05 PM
leelnich Re: how to calculate the... 06-29-2017, 12:53 PM
leelnich Re: how to calculate the... 06-30-2017, 02:49 AM
  1. #1
    Registered User
    Join Date
    06-28-2017
    Location
    Singapore
    MS-Off Ver
    2013
    Posts
    2

    how to calculate the probability to be homozygous?

    Hello everyone ,

    I have a question concerning formulas. I feel that it should be easy to solve but I can't figure out how to do it myself
    So, I am working on mutations frequencies and I want to calculate the probability to be homozygous (ie have two mutations together).

    My excel is like this
    mutation freq
    A 4.19E-06
    B 4.17E-06
    C 4.12E-06
    D 3.28E-05
    and it goes until >300 rows ><"

    What I want should be prob of A to "meet" A, B, C and D ... = A*A + A*B + A*C + A*D ...
    And then B to "meet" A, B, C and D ... = B*B + B*C + B*D ... (no B * A because it was in the previous one)
    and so on ...

    And in the end I want the sum of all the probabilities.

    Is there any formula I can apply for my problem.

    thank you very much!

  2. #2
    Administrator FDibbins's Avatar
    Join Date
    12-29-2011
    Location
    Duncansville, PA USA
    MS-Off Ver
    Excel 7/10/13/16/365 (PC ver 2310)
    Posts
    53,047

    Re: how to calculate the probability to be homozygous?

    Hi, welcome to the forum

    Isnt this just x factorial?
    1. Use code tags for VBA. [code] Your Code [/code] (or use the # button)
    2. If your question is resolved, mark it SOLVED using the thread tools
    3. Click on the star if you think someone helped you

    Regards
    Ford

  3. #3
    Forum Expert leelnich's Avatar
    Join Date
    03-20-2017
    Location
    Delaware, USA
    MS-Off Ver
    Office 2016
    Posts
    2,807

    Re: how to calculate the probability to be homozygous?

    Hi all- Sort of. The calculation involves (n)(n+1)/2 "parts". Paste the following formula in C2 and copy down. Then sum Column C (not shown).

    =B2*SUM(B$2:B2)

    Row\Col
    A
    B
    C
    1
    Mut.Freq. Partial Sums
    2
    A
    4.19E-06
    1.76E-11
    3
    B
    4.17E-06
    3.49E-11
    4
    C
    4.12E-06
    5.14E-11
    5
    D
    3.28E-05
    1.49E-09


    Please click the Add Reputation star below any helpful posts, and if you have your answer, mark your thread as SOLVED (Thread Tools up top). Thanks!-Lee
    Last edited by leelnich; 06-28-2017 at 11:44 PM.

  4. #4
    Registered User
    Join Date
    06-28-2017
    Location
    Singapore
    MS-Off Ver
    2013
    Posts
    2

    Re: how to calculate the probability to be homozygous?

    I am nor sure about your answers ...
    I added in a (very) small sample what my data look like when I do it manually (which is impossible if you have more than 300 frequencies to multiply )

    In blue are the formula I used.

    Untitled-1.jpg

    I hope this will help!

    thank you again

  5. #5
    Forum Guru
    Join Date
    08-28-2014
    Location
    USA
    MS-Off Ver
    Excel 365 version 2501
    Posts
    18,849

    Re: how to calculate the probability to be homozygous?

    Based on the layout of the screenshot in post #4, paste the following formula into cell D4, then copy down and across:
    Formula: copy to clipboard
    =IF(ROW()<=COLUMN(),$C4*D$3,"")

    Let us know if you have any questions.
    Consider taking the time to add to the reputation of everybody that has taken the time to respond to your query.

  6. #6
    Forum Expert shg's Avatar
    Join Date
    06-20-2007
    Location
    The Great State of Texas
    MS-Off Ver
    2010, 2019
    Posts
    40,689

    Re: how to calculate the probability to be homozygous?

    I would anchor that to the UL corner of the table, so it works if you insert rows or columns:

    =IF(ROWS($C$3:D4) <= COLUMNS($C$3:D4), $C4 * D$3, "")
    Entia non sunt multiplicanda sine necessitate

  7. #7
    Forum Expert leelnich's Avatar
    Join Date
    03-20-2017
    Location
    Delaware, USA
    MS-Off Ver
    Office 2016
    Posts
    2,807

    Re: how to calculate the probability to be homozygous?

    My solution from post#3 yields the same result as OP's post#4, after summing the partials as instructed:
    (Bear in mind, our data is rounded to 3 significant figures because we're copying from a picture. )
    This is why C2 shows "1.08" instead of "1.07".


    Row\Col
    B
    C
    D
    2
    3.28E-05
    1.08E-09
    =B2*SUM(B$2:B2)
    3
    4.09E-06
    1.51E-10
    =B3*SUM(B$2:B3)
    4
    4.06E-06
    1.66E-10
    =B4*SUM(B$2:B4)
    5
    4.08E-06
    1.84E-10
    6
    4.08E-06
    2.00E-10
    7
    8.68E-06
    5.02E-10
    8
    4.48E-06
    2.79E-10
    9
    2.56E-09
    =SUM(C2:C8)


    Each entry is multiplied by itself PLUS all preceding entries.
    To fit the layout in your picture, paste this in D4 and copy down:
    =C4*SUM(C$4:C4)
    Last edited by leelnich; 06-30-2017 at 09:34 AM.

  8. #8
    Forum Expert leelnich's Avatar
    Join Date
    03-20-2017
    Location
    Delaware, USA
    MS-Off Ver
    Office 2016
    Posts
    2,807

    Re: how to calculate the probability to be homozygous?

    Continuing from post #7, re-arranging the inputs even demonstrates the SAME SUBTOTALS (in reverse order) as shown in post #4:

    Untitled.png

    Please click the Add Reputation star below any helpful posts, and if you have your answer, mark your thread as SOLVED (Thread Tools up top). Thanks!-Lee
    Last edited by leelnich; 06-30-2017 at 09:35 AM.

+ Reply to Thread

Thread Information

Users Browsing this Thread

There are currently 1 users browsing this thread. (0 members and 1 guests)

Similar Threads

  1. Formula/formatting to calculate probability
    By kjrmitch in forum Excel Formulas & Functions
    Replies: 1
    Last Post: 10-20-2015, 10:19 PM
  2. how to use & calculate probability in excel
    By Navin Agrawal in forum Excel Formulas & Functions
    Replies: 1
    Last Post: 09-17-2015, 12:01 PM
  3. Calculate the probability to reach at certain point......
    By edneco in forum Excel Charting & Pivots
    Replies: 3
    Last Post: 06-03-2014, 04:47 PM
  4. Replies: 4
    Last Post: 11-26-2011, 02:33 PM
  5. Using Time Results to Calculate Probability
    By shad in forum Excel Formulas & Functions
    Replies: 0
    Last Post: 08-05-2010, 02:48 PM
  6. How to calculate total probability of loss from combination of probabilities
    By prr in forum Excel Programming / VBA / Macros
    Replies: 1
    Last Post: 12-09-2009, 06:48 PM
  7. [SOLVED] How to calculate probability
    By Al in forum Excel General
    Replies: 4
    Last Post: 12-01-2005, 08:10 PM

Tags for this Thread

Bookmarks

Posting Permissions

  • You may not post new threads
  • You may not post replies
  • You may not post attachments
  • You may not edit your posts

Search Engine Friendly URLs by vBSEO 3.6.0 RC 1